Set up a model for xde_diffeqn

Usage

xde_setup(
  modelName = "unnamed",
  MYZname = "RM",
  Xname = "SIS",
  Lname = "trace",
  nPatches = 1,
  nVectors = 1,
  nHosts = 1,
  HPop = 1000,
  membership = 1,
  MYZopts = list(),
  calK = "herethere",
  calKopts = list(),
  EIPname = "static",
  EIPopts = list(),
  Xopts = list(),
  BFopts = list(),
  residence = 1,
  searchB = 1,
  F_circadian = NULL,
  TimeSpent = "athome",
  TimeSpentOpts = list(),
  searchQ = 1,
  Lopts = list()
)

Arguments

modelName: is a name for the model (arbitrary)
MYZname: is a character string defining a MYZ model
Xname: is a character string defining a X model
Lname: is a character string defining a L model
nPatches: is the number of patches
nVectors: is the number of vector species
nHosts: is the number of vertebrate host species
HPop: is the number of humans in each patch
membership: is a vector that describes the patch where each aquatic habitat is found
MYZopts: a list to configure the MYZ model
calK: is either a calK matrix or a string that defines how to set it up
calKopts: are the options to setup calK
EIPname: are the options to setup EIPmod
EIPopts: are the options to setup EIPmod
Xopts: a list to configure the X model
BFopts: a list to configure the blood feeding model
residence: is a vector that describes the patch where each human stratum lives
searchB: is a vector of search weights for blood feeding
F_circadian: is a function describing mosquito daily activity
TimeSpent: is either a TimeSpent matrix or a string to call a function that sets it up
TimeSpentOpts: are the options to setup TimeSpent
searchQ: is a vector of search weights for egg laying
Lopts: a list to configure the L model

Value

a list