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The SI model for mosquito infection dynamics has the defined variable classes:

  • M is the density of mosquitoes in each patch;

  • Y is the density of infected mosquitoes in each patch.

The density of infectious mosquitoes in each patch is given by a term (returned by F_fqZ.SI): Z=eΩτY

The model blood feeding parameters are:

  • f is the overall blood feeding rate

  • q is the human fraction for blood feeding

The parameters describing egg laying (see F_eggs.SI) are:

  • ν is the egg laying rate

  • ξ is the number of eggs per batch

The model demographic parameters are:

  • g is the mortality rate

  • σ is the emigration rate

  • μ is the emigration loss rate

  • K is the mosquito dispersal matrix

The four parameters describing mortality and migration are used to construct a demographic matrix: Ω=diag(g)(diag(1μ)K)diag(σ)

The emergence rate of adult mosquitoes, Λ, is computed by F_emerge, and the derivatives are given by the equations: dM/dt=ΛΩMdY/dt=fqκ(MY)ΩY.

Usage

# S3 method for class 'SI'
dMYZdt(t, y, pars, s)

Arguments

t

current simulation time

y

state vector

pars

an xds object

s

the species index

Value

a vector with the derivatives

See also