Make parameters for workhorse human model, with defaults

Make parameters for workhorse human model, with defaults

create_Xpar_workhorse(
  nStrata,
  Xopts = list(),
  tau = 12,
  b = 0.55,
  r = 1/200,
  sigma = 1/30,
  phi = 1/10,
  c1 = 0.3,
  c2 = 0.1,
  c3 = 0.03,
  c4 = 0.01,
  cG = 0.15,
  xi_1 = 1/20,
  xi_2 = 1/40,
  xi_3 = 1/80,
  zeta_U = 1/365,
  zeta_A = 1/100,
  zeta_1 = 1/100,
  zeta_2 = 1/180,
  zeta_3 = 1/180,
  zeta_4 = 1/365
)

Arguments

nStrata

the number of population strata

Xopts

a [list] that could overwrite defaults

tau

the incubation period

b

the probability of infection, per infectious bite

r

the clearance rate

sigma

the rate individuals lose chemoprotection

phi

the rate of transition from the acute to the chronic phase

c1

the probability of infecting a mosquito, stage 1

c2

the probability of infecting a mosquito, stage 2

c3

the probability of infecting a mosquito, stage 3

c4

the probability of infecting a mosquito, stage 4

cG

the probability of infecting a mosquito, prophylaxed

xi_1

the rate of transition from stage 1 to stage 2

xi_2

the rate of transition from stage 2 to stage 3

xi_3

the rate of transition from stage 3 to stage 4

zeta_U

the treatment rate for uninfected individuals

zeta_A

the treatment rate for acutely infected individuals

zeta_1

the treatment rate for stage 1

zeta_2

the treatment rate for stage 2

zeta_3

the treatment rate for stage 3

zeta_4

the treatment rate for stage 4

Value

a [list]