Package index
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xds_analyze() - Analyze a Dynamical System
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xds_scaling() - Scaling for Malaria Metrics
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make_calR() - Parasite Dispersal through one Parasite Generation (Humans)
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make_calZ() - Parasite Dispersal through one Parasite Generation (Mosquitoes)
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compute_Lambda_threshold() - Get High/Low Values for Lambda
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compute_HTC() - Compute the HTC Matrix
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compute_VC() - Compute the VC Matrix
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make_VC_matrix() - Parasite dispersal by mosquitoes
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get_VC() - Get VC
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get_VC_matrix() - Get VC
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make_HTC_matrix() - Parasite dispersal by humans
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make_VC() - Make VC
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plot_connectivity_sankey() - Plot Connectivity as a Sankey Diagram
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plot_connectivity_graph() - Plot Connectivity
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plot_flow_sankey() - Plot Connectivity as a Sankey Diagram
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xds_scaling() - Scaling for Malaria Metrics
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xds_scaling_Lambda() - Compute
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lines_eirVpr() - Add lines for the EIR(t) vs. the PR(t)
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lines_eirpr() - Add lines for an eir-pr scaling relationship
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add_eirpr_orbits() - Draw the orbit for the \(i^{th}\) element of eirpr$scaling.
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add_orbits() - Draw the orbit for the \(i^{th}\) element of eirpr$scaling.
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add_orbits_px() - Draw the orbit for the \(i^{th}\) element of eirpr$scaling, and add points at the minimum and maximum eir and pr
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xds_plot_eirVpr() - xds_plot EIR(t) vs. the PR(t)
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xds_plot_eirpr() - xds_plot the eir-pr scaling relationship
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compute_IoSD_F() - Compute the Index of Dispersal for a function F(t) over one year.
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compute_IoSD_S() - Compute the Index of Seasonal Dispersal for a seasonal pattern \(S(t)\) over one year. This assumes that $$\int_0^{365} S(t)dt = 365$$
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compute_IoSD_pr() - Compute the Index of Seasonal Dispersal for a PR seasonal orbit for the \(i^{th}\) element of
eirpr$scaling
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eir2fqZ() - Convert the EIR into a vector describing infective biting density
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fqZ2eir() - Convert a vector describing infective biting density into the EIR, \(E\)
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xds_eir2ni() - Convert eir to ni
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xds_eir2pr() - Convert eir to pr
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xds_pr2Lambda() - Convert pr to lambda
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xds_pr2eir() - Convert pr to eir
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xds_pr2m() - Convert pr to mosquito density
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xds_pr2ni() - Convert pr to ni
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pr2Lambda() - Using the eirpr matrix and a RM xds_obj, convert pr to Lambda