Compute the log likelihood for a set of parasites counts data — llik_counts_sz • ramp.falciparum

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Compute the log likelihood for a set of parasites counts data

llik_counts_sz(
  prms,
  sz,
  alpha,
  counts,
  par_Fmu,
  par_O,
  F_b,
  F_Sa,
  q = 6,
  bvm = 13
)

Arguments

prms: A set of parameters to be fitted
sz: the size parameter
alpha: the AoI for the observations
counts: the counts
par_Fmu: an object to dispatch Fmu
par_O: an object to dispath d_Omega
F_b: a function to constrain the upper bound for fitting for Fmu
F_Sa: a function to constrain the slope for fitting for Fmu
q: the sampling volume (in $\log_{10} microliters$ )
bvm: the blood volume (in $\log_{10} microliters$ )

Value

the negative log likelihood for a set of observations