Detection of infection given parasitemia

Detection of infection given parasitemia

d_clone_detect(
  a,
  FoIpar,
  tau = 0,
  hhat = 1,
  r = 1/200,
  par_RBC = par_lRBC_static(),
  Fmu_par = par_Fmu_base(),
  par_Omega = par_Omega_beta(),
  pWda = par_Wda_none(),
  par_sample = par_nb()
)

Arguments

a

host cohort age

FoIpar

parameters that define an FoI function

tau

the cohort birthday

hhat

a local scaling parameter for the FoI

r

the clearance rate for a simple infection

par_RBC

parameters to compute log10RBC

Fmu_par

parameters to compute Fmu

par_Omega

parameters to compute d_Omega

pWda

parameters to dispatch Wda

par_sample

parameters that define a detection function

Value

a numeric vector of length(a)