Function reference
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lines_EIR()
- Add lines for the true EIR
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lines_PR()
- Add the orbits for the SIS model to a plot for models of human infection and immunity
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lines_aEIR()
- Add the orbits for the SIS model to a plot for models of human infection and immunity
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lines_eirVpr()
- Add lines for the EIR vs. the PR
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lines_eirpr()
- Add lines for the EIR vs. the PR
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plot_EIR()
- Basic plotting: plot the true EIR
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plot_PR()
- Basic plotting: plot the true PR.
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plot_aEIR()
- Basic plotting: plot the true aEIR
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plot_eirVpr()
- Plot the EIR vs. the PR
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plot_eirpr()
- Plot the EIR vs. the PR
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pr2Lambda()
- Using the eirpr matrix and a RM model, convert pr to Lambda
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split_stratum_by_biting()
- Split a stratum into two strata, assigning
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ssMYZ()
- Set up the MYZss object for
xde_scaling_lambda
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xde_eir2ni()
- Convert eir to ni
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xde_eir2pr()
- Convert eir to pr
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xde_pr2eir()
- Convert pr to eir
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xde_pr2ni()
- Convert pr to ni
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xde_scaling()
- Construct an eirpr object for an arbitary model
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xde_scaling_Z()
- Compute eir-pr scaling relationships
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xde_scaling_eir()
- Compute eir-pr scaling relationships
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xde_scaling_lambda()
- Compute lambda from an eirpr object using the Ross-Macdonald model