Compute \(B_\tau(a | h)\) — parasite

This function first computes the PDF for simple infections, d_clone_density, and then computes the CDF for the full distribution, summed from MoI = 1 up to a large number using convolutions.

Usage

parasite_density(
  meshX,
  a,
  FoIpar,
  tau = 0,
  hhat = 1,
  r = 1/200,
  RBC_par = par_lRBC_static(),
  Fmu_par = par_Fmu_base(),
  Omega_par = par_Omega_beta(),
  pWda = par_Wda_none()
)

Arguments

meshX: a mesh over parasite densities
a: host cohort age
FoIpar: parameters that define an FoI function
tau: the cohort birthday
hhat: a local scaling parameter for the FoI
r: the clearance rate for a simple infection
RBC_par: parameters to compute log10RBC
Fmu_par: parameters to compute Fmu
Omega_par: parameters to compute d_Omega
pWda: parameters to dispatch Wda

Value

a numeric vector of length meshX