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HARP HUB


  • The html pages are generated from R Markdown documents: pagename.html is generated by pagename.Rmd

  • The banner at the top should include links to the HARP landing page, the navigation HUB, and (possibly) other closely related pages.

  • The sections use tabset to make the material easy to access. Please use the command {.tabset .tabset-fade .tabset-pills}

  • The sandstone theme is used throughout.

  • HARP is a good place to introduce hard concepts in plain language. We hope to emulate the writing style of Numerical Recipes in C. In the preface to the 2nd edition, the authors described their style in the 1st edition as ``…informal, fearlessly editorial, unesoteric, and above all useful.’’

  • The intent of HARP is to introduce complex concepts, so please keep it short and aim for one of the following:

    • lecture notes

    • a user’s guide

    • a vignettes that teach a single concept

    • insightful commentary

  • If a document is getting too long and complex, consider splitting it up.

  • Publish the long version, write the short version here, and add citations. In general, we don’t want long essays or drafts.

  • We think academic journals are the best place to put complex analyses, or discussions of highly technical material. Any new methods and new concepts should go through peer review.

  • Please use the functionality to embed instructive R-code:

x = seq(-3, 3, length.out=200)
plot(x, x^2-4, type = "l", ylab = expression(x^2-4))
segments(-3, 0, 3, 0, col = grey(0.8))

  • References are strongly encouraged. The bibliography is refs.bib using the plos citation style. To add a citiation, use [@cite-key].

  • If there are any references, the last tab should be called Refs. For example, [@WernsdorferWH1988MalariaPrinciples] is a citation to Malaria: Principles and Practice of Malariology [1].

  • If you want to cite something but you can’t find it in refs.bib, tell Dave it’s missing and send a link.

1.
Wernsdorfer WH, McGregor IA, editors. Malaria: Principles and Practice of Malariology. New York: Churchill Livingstone; 1988. Available: http://www.worldcat.org/title/malaria-principles-and-practice-of-malariology/oclc/15793746